From b0e7d37dfdc5abe774dc0c531f9cbb2d93764f01 Mon Sep 17 00:00:00 2001 From: Peter van 't Hof Date: Fri, 26 Aug 2016 09:39:38 +0200 Subject: [PATCH] Fix format --- .../scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala b/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala index 264384b05..013e9ddc1 100644 --- a/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala +++ b/biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala @@ -63,7 +63,7 @@ object ExtractAlignedFastq extends ToolCommand { def intFromCoord(s: String): Int = s.replaceAll(",", "").replaceAll("\\.", "").toInt inStrings.map { - case ptn1(chr, start, end) if intFromCoord(end) >= intFromCoord(start) => new Interval(chr, intFromCoord(start), intFromCoord(end)) + case ptn1(chr, start, end) if intFromCoord(end) >= intFromCoord(start) => new Interval(chr, intFromCoord(start), intFromCoord(end)) case ptn2(chr, start) => val startCoord = intFromCoord(start) new Interval(chr, startCoord, startCoord) -- GitLab