Commit aef401d4 authored by Ruben Vorderman's avatar Ruben Vorderman

Add fix to increase default fastqc memory to 4 GB per core, to make single-threaded runs easier.

parent 0cef5b4b
...@@ -51,6 +51,8 @@ class Fastqc(val parent: Configurable) extends BiopetCommandLineFunction with Ve ...@@ -51,6 +51,8 @@ class Fastqc(val parent: Configurable) extends BiopetCommandLineFunction with Ve
def versionCommand = executable + " --version" def versionCommand = executable + " --version"
override def defaultThreads = 4 override def defaultThreads = 4
override def defaultCoreMemory: Double = 4.0
/** Sets contaminants and adapters when not yet set */ /** Sets contaminants and adapters when not yet set */
override def beforeGraph() { override def beforeGraph() {
this.jobOutputFile = new File(output.getParentFile, s".${fastqfile.getName}.fastqc.out") this.jobOutputFile = new File(output.getParentFile, s".${fastqfile.getName}.fastqc.out")
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