Commit aedc6bcd authored by Sander Bollen's avatar Sander Bollen
Browse files

xhmm pca wrapper

parent 6563368e
package nl.lumc.sasc.biopet.extensions.xhmm
import java.io.File
import nl.lumc.sasc.biopet.utils.config.Configurable
import org.broadinstitute.gatk.utils.commandline.{Input, Output}
/**
* Created by Sander Bollen on 23-11-16.
*/
class XhmmPca(val root: Configurable) extends Xhmm {
@Input
var inputMatrix: File = _
@Output
var pcaFile: File = _
def cmdLine = {
executable + required("--PCA") + required("-r", inputMatrix) + required("--PCAfiles", pcaFile)
}
}
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