Commit ad20fbd3 authored by Peter van 't Hof's avatar Peter van 't Hof

Format issues

parent 90e81770
......@@ -514,9 +514,9 @@ class HaplotypeCaller(val root: Configurable) extends CommandLineGATK with Scatt
conditional(filter_bases_not_stored, "-filterNoBases", escape = true, format = "%s") +
(this.getVersion match {
case Some(s) if s.contains("3.0") | s.contains("3.1") | s.contains("3.2") | s.contains("3.3") | s.contains("3.4") | s.contains("3.5") | s.contains("3.6") =>
optional("-stand_emit_conf", standard_min_confidence_threshold_for_emitting, spaceSeparated = true, escape = true, format = standard_min_confidence_threshold_for_emittingFormat)
optional("-stand_emit_conf", standard_min_confidence_threshold_for_emitting, spaceSeparated = true, escape = true, format = standard_min_confidence_threshold_for_emittingFormat)
case _ => ""
})
})
}
object HaplotypeCaller {
......
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