From ad12312db1680c01bfb6187d2368a0c6e7c146d8 Mon Sep 17 00:00:00 2001
From: sajvanderzeeuw <sajvanderzeeuw@sasc-sander.lumcnet.prod.intern>
Date: Tue, 28 Oct 2014 11:02:13 +0100
Subject: [PATCH] fix on main class
---
.../nl/lumc/sasc/biopet/extensions/picard/SamToFastq.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SamToFastq.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SamToFastq.scala
index f89757c6f..5733c8b73 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SamToFastq.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SamToFastq.scala
@@ -5,7 +5,7 @@ import nl.lumc.sasc.biopet.core.config.Configurable
import org.broadinstitute.gatk.utils.commandline.{ Input, Output, Argument }
class SamToFastq(val root: Configurable) extends Picard {
- javaMainClass = "picard.sam.SortSam"
+ javaMainClass = "picard.sam.SamToFastq"
@Input(doc = "The input SAM or BAM files to analyze.", required = true)
var input: File = _
--
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