diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SamToFastq.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SamToFastq.scala index f89757c6ffb059d3af428dd68e1b9eaebf927d86..5733c8b7331742164e03af896c7045e14948226c 100644 --- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SamToFastq.scala +++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/SamToFastq.scala @@ -5,7 +5,7 @@ import nl.lumc.sasc.biopet.core.config.Configurable import org.broadinstitute.gatk.utils.commandline.{ Input, Output, Argument } class SamToFastq(val root: Configurable) extends Picard { - javaMainClass = "picard.sam.SortSam" + javaMainClass = "picard.sam.SamToFastq" @Input(doc = "The input SAM or BAM files to analyze.", required = true) var input: File = _