Commit ad09bed2 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Format fixes

parent 2a90eac3
......@@ -16,7 +16,7 @@ package nl.lumc.sasc.biopet.extensions.tools
import java.io.File
import nl.lumc.sasc.biopet.core.{Reference, ToolCommandFunction}
import nl.lumc.sasc.biopet.core.{ Reference, ToolCommandFunction }
import nl.lumc.sasc.biopet.utils.config.Configurable
import org.broadinstitute.gatk.utils.commandline.Input
......
......@@ -4,13 +4,13 @@ import java.io.File
import htsjdk.variant.vcf.VCFFileReader
import nl.lumc.sasc.biopet.utils.ToolCommand
import nl.lumc.sasc.biopet.utils.intervals.{ BedRecord, BedRecordList }
import nl.lumc.sasc.biopet.utils.intervals.BedRecordList
import scala.collection.JavaConversions._
/**
* Created by pjvanthof on 10/12/2016.
*/
* Created by pjvanthof on 10/12/2016.
*/
object ValidateVcf extends ToolCommand {
case class Args(inputVcf: File = null,
reference: File = null,
......
......@@ -7,8 +7,8 @@ import org.scalatest.testng.TestNGSuite
import org.testng.annotations.Test
/**
* Created by pjvan_thof on 12-12-16.
*/
* Created by pjvan_thof on 12-12-16.
*/
class ValidateVcfTest extends TestNGSuite with Matchers {
private def resourcePath(p: String): String =
......
......@@ -16,7 +16,7 @@ package nl.lumc.sasc.biopet.pipelines.shiva
import java.io.File
import nl.lumc.sasc.biopet.core.{PipelineCommand, Reference}
import nl.lumc.sasc.biopet.core.{ PipelineCommand, Reference }
import nl.lumc.sasc.biopet.core.report.ReportBuilderExtension
import nl.lumc.sasc.biopet.extensions.gatk._
import nl.lumc.sasc.biopet.extensions.tools.ValidateVcf
......
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