diff --git a/protected/biopet-gatk-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/HaplotypeCaller.scala b/protected/biopet-gatk-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/HaplotypeCaller.scala index 819a836bfe03486ca5b86a30708ead4bb9b39a67..d7a07538c9cfcff82786c0d09d38001899783af5 100644 --- a/protected/biopet-gatk-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/HaplotypeCaller.scala +++ b/protected/biopet-gatk-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/HaplotypeCaller.scala @@ -8,7 +8,7 @@ package nl.lumc.sasc.biopet.extensions.gatk.broad import java.io.File import nl.lumc.sasc.biopet.utils.config.Configurable -import org.broadinstitute.gatk.utils.commandline.{Gather, Output} +import org.broadinstitute.gatk.utils.commandline.{ Gather, Output } import org.broadinstitute.gatk.utils.variant.GATKVCFIndexType class HaplotypeCaller(val root: Configurable) extends org.broadinstitute.gatk.queue.extensions.gatk.HaplotypeCaller with GatkGeneral { diff --git a/protected/biopet-gatk-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/UnifiedGenotyper.scala b/protected/biopet-gatk-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/UnifiedGenotyper.scala index c0cecb873aceb39d8073e91bf7571a18f20f634d..71e00e0512dee4a5d7f12744d729a8166ca18fe0 100644 --- a/protected/biopet-gatk-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/UnifiedGenotyper.scala +++ b/protected/biopet-gatk-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/broad/UnifiedGenotyper.scala @@ -8,7 +8,7 @@ package nl.lumc.sasc.biopet.extensions.gatk.broad import java.io.File import nl.lumc.sasc.biopet.utils.config.Configurable -import org.broadinstitute.gatk.utils.commandline.{Gather, Output} +import org.broadinstitute.gatk.utils.commandline.{ Gather, Output } class UnifiedGenotyper(val root: Configurable) extends org.broadinstitute.gatk.queue.extensions.gatk.UnifiedGenotyper with GatkGeneral {