Merge new framework setup into feature branch

a927d433 · wyleung · 1676c967 · a927d433 · a927d433 · a927d433
Commit a927d433 authored Nov 25, 2014 by wyleung
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/svcallers/BreakdancerCaller.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/svcallers/BreakdancerCaller.scala
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/svcallers/BreakdancerConfig.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/svcallers/BreakdancerConfig.scala
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/svcallers/CleverCaller.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/svcallers/CleverCaller.scala
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/svcallers/Delly.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/svcallers/Delly.scala
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/svcallers/DellyCaller.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/svcallers/DellyCaller.scala