From a8c6edc87fdf6e442461153341834c906e232ddb Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 30 Dec 2015 16:27:56 +0100
Subject: [PATCH] Fix summary jobs
---
.../nl/lumc/sasc/biopet/pipelines/gears/CombineReads.scala | 2 ++
1 file changed, 2 insertions(+)
diff --git a/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/CombineReads.scala b/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/CombineReads.scala
index 2944fb22e..66abc4caf 100644
--- a/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/CombineReads.scala
+++ b/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/CombineReads.scala
@@ -69,6 +69,8 @@ class CombineReads(val root: Configurable) extends QScript with SummaryQScript w
val notCombinedR2Fastqc = Fastqc(this, this.combinedFastq, new File(outputDir, "not_combined_R2_fastqc"))
add(notCombinedR2Fastqc)
addSummarizable(notCombinedR2Fastqc, "fastqc_not_combined_R2")
+
+ addSummaryJobs()
}
/** Must return a map with used settings for this pipeline */
--
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