From a87e2991c02c05ea8bcdef25efe5eaa74499f1dc Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Fri, 18 Sep 2015 15:16:02 +0200
Subject: [PATCH] Add comment
---
.../nl/lumc/sasc/biopet/core/extensions/CheckChecksum.scala | 2 ++
1 file changed, 2 insertions(+)
diff --git a/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/extensions/CheckChecksum.scala b/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/extensions/CheckChecksum.scala
index 79b46d9d3..0ae2587f7 100644
--- a/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/extensions/CheckChecksum.scala
+++ b/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/extensions/CheckChecksum.scala
@@ -32,6 +32,8 @@ class CheckChecksum extends InProcessFunction {
if (outputChecksum != checksum.toLowerCase) {
logger.error(s"Input file: '$inputFile' md5sum is not as expected, aborting pipeline")
+
+ // 130 Simulates a ctr-C
Runtime.getRuntime.halt(130)
}
}
--
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