From a86f9771a213d2e2d67ab89ad3941bb09bd44a15 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 11 Apr 2016 08:16:59 +0200
Subject: [PATCH] Added empty test
---
public/gwas-test/pom.xml | 12 +++++++
.../pipelines/gwastest/GwasTestTest.scala | 31 +++++++++++++++++++
2 files changed, 43 insertions(+)
create mode 100644 public/gwas-test/src/test/scala/nl/lumc/sasc/biopet/pipelines/gwastest/GwasTestTest.scala
diff --git a/public/gwas-test/pom.xml b/public/gwas-test/pom.xml
index e7977c576..619df649c 100644
--- a/public/gwas-test/pom.xml
+++ b/public/gwas-test/pom.xml
@@ -45,6 +45,18 @@
<artifactId>BiopetToolsExtensions</artifactId>
<version>${project.version}</version>
</dependency>
+ <dependency>
+ <groupId>org.testng</groupId>
+ <artifactId>testng</artifactId>
+ <version>6.8</version>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>org.scalatest</groupId>
+ <artifactId>scalatest_2.10</artifactId>
+ <version>2.2.1</version>
+ <scope>test</scope>
+ </dependency>
</dependencies>
</project>
\ No newline at end of file
diff --git a/public/gwas-test/src/test/scala/nl/lumc/sasc/biopet/pipelines/gwastest/GwasTestTest.scala b/public/gwas-test/src/test/scala/nl/lumc/sasc/biopet/pipelines/gwastest/GwasTestTest.scala
new file mode 100644
index 000000000..0d2e0cb44
--- /dev/null
+++ b/public/gwas-test/src/test/scala/nl/lumc/sasc/biopet/pipelines/gwastest/GwasTestTest.scala
@@ -0,0 +1,31 @@
+package nl.lumc.sasc.biopet.pipelines.gwastest
+
+import nl.lumc.sasc.biopet.utils.config.Config
+import org.broadinstitute.gatk.queue.QSettings
+import org.scalatest.Matchers
+import org.scalatest.testng.TestNGSuite
+import org.testng.annotations.Test
+
+/**
+ * Created by pjvan_thof on 4/11/16.
+ */
+class GwasTestTest extends TestNGSuite with Matchers {
+ def initPipeline(map: Map[String, Any]): GwasTest = {
+ new GwasTest {
+ override def configName = "gwastest"
+ override def globalConfig = new Config(map)
+ qSettings = new QSettings
+ qSettings.runName = "test"
+ }
+ }
+
+
+
+ @Test
+ def testEmpty: Unit = {
+ val pipeline = initPipeline(Map())
+ intercept[IllegalArgumentException] {
+ pipeline.script()
+ }
+ }
+}
--
GitLab