Commit a6568f28 authored by Wai Yi Leung's avatar Wai Yi Leung
Browse files

Change error text for delly

parent 2ecba16e
......@@ -103,7 +103,7 @@ object CleverFixVCF extends ToolCommand {
for (line <- inputVCF.getLines()) {
(line == vcfColHeader) match {
case true => {
writer.write(extraHeader+"\n")
writer.write(extraHeader + "\n")
writer.write(vcfColReplacementHeader + "\n")
}
case _ => writer.write(line + "\n")
......
......@@ -68,7 +68,7 @@ class Delly(val root: Configurable) extends SvCaller {
add(delly)
}
require(catVariants.inputFiles.nonEmpty, "Must atleast 1 SV-type be selected for Delly")
require(catVariants.inputFiles.nonEmpty, "At least 1 SV-type must be selected for Delly [DEL/DUP/INV/TRA]")
add(catVariants)
addVCF(sample, catVariants.outputFile)
......
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