From a5d7ff21739e4275f8e2d8722a6b14fec0876e96 Mon Sep 17 00:00:00 2001
From: Sander Bollen <a.h.b.bollen@lumc.nl>
Date: Fri, 10 Apr 2015 11:05:57 +0200
Subject: [PATCH] typos and grammar
---
.../scala/nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBam.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBam.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBam.scala
index 23fa77437..126c40e15 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBam.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBam.scala
@@ -81,7 +81,7 @@ object CheckAllelesVcfInBam extends ToolCommand {
val commandArgs: Args = argsParser.parse(args, Args()) getOrElse sys.exit(1)
if (commandArgs.bamFiles.size != commandArgs.samples.size)
- logger.warn("Number of samples is diffrent then number of bam files, left over will be removed")
+ logger.warn("Number of samples is different from number of bam files: those left over will be removed")
val samReaderFactory = SamReaderFactory.makeDefault
val bamReaders: Map[String, SamReader] = Map(commandArgs.samples zip commandArgs.bamFiles.map(x => samReaderFactory.open(x)): _*)
val bamHeaders = bamReaders.map(x => (x._1, x._2.getFileHeader))
--
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