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biopet.biopet
Commits
a4d3abf8
Commit
a4d3abf8
authored
May 19, 2016
by
Peter van 't Hof
Browse files
Added more tests
parent
ba36a06a
Changes
1
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Inline
Side-by-side
generate-indexes/src/test/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/GenerateIndexesTest.scala
View file @
a4d3abf8
...
...
@@ -51,6 +51,27 @@ class GenerateIndexesTest extends TestNGSuite with Matchers {
pipeline
.
script
()
}
@Test
def
testContigMapDbsnp
:
Unit
=
{
val
pipeline
=
initPipeline
(
Map
())
pipeline
.
referenceConfig
=
Map
(
"s1"
->
Map
(
"g1"
->
Map
(
"fasta_uri"
->
"uri"
,
"dbsnp_vcf_uri"
->
"uri.vcf.gz"
,
"dbsnp_contig_map"
->
Map
(
"1"
->
"chr1"
))))
pipeline
.
script
()
}
@Test
def
testUnzippedContigMapDbsnp
:
Unit
=
{
val
pipeline
=
initPipeline
(
Map
())
pipeline
.
referenceConfig
=
Map
(
"s1"
->
Map
(
"g1"
->
Map
(
"fasta_uri"
->
"uri"
,
"dbsnp_vcf_uri"
->
"uri.vcf"
,
"dbsnp_contig_map"
->
Map
(
"1"
->
"chr1"
))))
pipeline
.
script
()
}
@Test
def
testSingleUnzippedDbsnp
:
Unit
=
{
val
pipeline
=
initPipeline
(
Map
())
pipeline
.
referenceConfig
=
Map
(
"s1"
->
Map
(
"g1"
->
Map
(
"fasta_uri"
->
"uri"
,
"dbsnp_vcf_uri"
->
"uri.vcf"
)))
pipeline
.
script
()
}
@Test
def
testMultiDbsnp
:
Unit
=
{
val
pipeline
=
initPipeline
(
Map
())
...
...
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