From a42f82e635320a55bd7326b32fd31fa9e36fe977 Mon Sep 17 00:00:00 2001
From: Sander van der Zeeuw <s.a.j.van_der_zeeuw@lumc.nl>
Date: Mon, 2 Feb 2015 11:12:52 +0100
Subject: [PATCH] made creating bam file with function createFile(*.bam)
---
.../main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala b/public/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala
index 47e892ab9..cd883186a 100644
--- a/public/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala
+++ b/public/carp/src/main/scala/nl/lumc/sasc/biopet/pipelines/carp/Carp.scala
@@ -63,7 +63,7 @@ class Carp(val root: Configurable) extends QScript with MultiSampleQScript {
}
}
- val bamFile = new File(sampleDir + sampleId + ".bam")
+ val bamFile = createFile(".bam")
val controls: List[String] = config("control", default = Nil)
def addJobs(): Unit = {
--
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