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biopet.biopet
Commits
a37fabe7
Commit
a37fabe7
authored
Sep 17, 2016
by
bow
Browse files
Merge branch 'fix-genstovcf' into 'develop'
replace semi-solon See merge request !451
parents
ca6efa52
936eabfb
Changes
1
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biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/GensToVcf.scala
View file @
a37fabe7
...
...
@@ -155,7 +155,9 @@ object GensToVcf extends ToolCommand {
.
make
()
}
val
infoMap
=
infoHeaderKeys
.
map
(
_
.
map
(
x
=>
(
"GENS_"
+
x
)
->
infoValues
.
get
(
infoHeaderMap
.
get
(
x
))).
toMap
).
getOrElse
(
Map
())
val
infoMap
=
infoHeaderKeys
.
map
(
_
.
map
(
x
=>
(
"GENS_"
+
x
)
->
infoValues
.
get
(
infoHeaderMap
.
get
(
x
)).
replaceAll
(
";"
,
","
)).
toMap
)
.
getOrElse
(
Map
())
val
builder
=
(
new
VariantContextBuilder
)
.
chr
(
cmdArgs
.
contig
)
...
...
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