Style fixes

a34e6b23 · Peter van 't Hof · b43464ed · a34e6b23
Commit a34e6b23 authored Apr 06, 2017 by Peter van 't Hof
Hide whitespace changes
Inline Side-by-side

Showing with 2 additions and 2 deletions

shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/Shiva.scala ...ain/scala/nl/lumc/sasc/biopet/pipelines/shiva/Shiva.scala +2 -2

No files found.
--- a/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/Shiva.scala
+++ b/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/Shiva.scala
@@ -248,8 +248,8 @@ class Shiva(val parent: Configurable) extends QScript with MultisampleMappingTra
      if (!usePrintReads) {
        import variantcallers._
        if (vc.callers.exists(_ match {
-          case _:HaplotypeCaller | _:HaplotypeCallerAllele | _:HaplotypeCallerGvcf => false
-          case _:UnifiedGenotyper | _:UnifiedGenotyperAllele => false
+          case _: HaplotypeCaller | _: HaplotypeCallerAllele | _: HaplotypeCallerGvcf => false
+          case _: UnifiedGenotyper | _: UnifiedGenotyperAllele => false
          case _ => true
        })) logger.warn("Not all variantcallers chosen can read BQSR files, All non-GATK")
      }