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biopet.biopet
Commit a34e6b23 authored by Peter van 't Hof's avatar Peter van 't Hof
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Style fixes

parent b43464ed
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shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/Shiva.scala
View file @ a34e6b23
......@@ -248,8 +248,8 @@ class Shiva(val parent: Configurable) extends QScript with MultisampleMappingTra
if (!usePrintReads) {
import variantcallers._
if (vc.callers.exists(_ match {
case _:HaplotypeCaller | _:HaplotypeCallerAllele | _:HaplotypeCallerGvcf => false
case _:UnifiedGenotyper | _:UnifiedGenotyperAllele => false
case _: HaplotypeCaller | _: HaplotypeCallerAllele | _: HaplotypeCallerGvcf => false
case _: UnifiedGenotyper | _: UnifiedGenotyperAllele => false
case _ => true
})) logger.warn("Not all variantcallers chosen can read BQSR files, All non-GATK")
}
......
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