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biopet.biopet
Commits
a2f6e5bf
Commit
a2f6e5bf
authored
Jan 05, 2017
by
Peter van 't Hof
Browse files
Change warning
parent
67c685a3
Changes
1
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biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/Reference.scala
View file @
a2f6e5bf
...
...
@@ -178,7 +178,7 @@ object Reference {
}
def
askReference
:
Map
[
String
,
Any
]
=
{
val
warn
=
"I
t's possible to select something else but be aware of installing all fasta / index files required by a pipeline.
"
val
warn
=
"I
f you use a non-standard reference, please make sure that you have generated all required indexes for this reference
"
val
globalSpecies
=
Config
.
global
.
defaults
.
getOrElse
(
"references"
,
Map
()).
asInstanceOf
[
Map
[
String
,
Any
]]
val
species
=
Question
.
string
(
"species"
,
description
=
Some
(
if
(
globalSpecies
.
nonEmpty
)
...
...
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