From a2cba5e140b9486b57c3ff415cdbc36fba5b13b8 Mon Sep 17 00:00:00 2001 From: Peter van 't Hof Date: Tue, 17 May 2016 11:56:30 +0200 Subject: [PATCH] Fixed type --- .../src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala index a4b43d0de..04d2a39b6 100644 --- a/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala +++ b/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala @@ -75,7 +75,7 @@ class Star(val root: Configurable) extends BiopetCommandLineFunction with Refere var genomeSAindexNbases: Option[Int] = config("genomesaindexnbases") var genomeSAsparseD: Option[Int] = config("genomesasparsed") - var sjdbGTFfile: Option[String] = config("sjdbgtfile") + var sjdbGTFfile: Option[File] = config("sjdbgtfile") var sjdbGTFchrPrefix: Option[String] = config("sjdbgtfchrprefix") var sjdbGTFfeatureExon: Option[String] = config("sjdbgtffeatureexon") var sjdbGTFtagExonParentTranscript: Option[String] = config("sjdbgtftagexonparenttranscript") -- GitLab