Commit a1cc8240 authored by Peter van 't Hof's avatar Peter van 't Hof

Added docs

parent b8ce6418
......@@ -23,6 +23,7 @@ This pipeline is used to analyse a group of samples. This pipeline only accepts
| --- | ---- | ------- | -------- |
| gears_use_kraken | Boolean | true | Run fastq file with kraken |
| gears_use_qiime_closed | Boolean | false | Run fastq files with qiime with the closed reference module |
| gears_use_qiime_open | Boolean | false | Run fastq files with qiime with the open reference module |
| gears_use_qiime_rtax | Boolean | false | Run fastq files with qiime with the rtax module |
| gears_use_seq_count | Boolean | false | Produces raw count files |
......@@ -75,6 +76,7 @@ Please refer [to our mapping pipeline](mapping.md) for information about how the
| --- | ---- | ------- | -------- |
| gears_use_kraken | Boolean | true | Run fastq file with kraken |
| gears_use_qiime_closed | Boolean | false | Run fastq files with qiime with the closed reference module |
| gears_use_qiime_open | Boolean | false | Run fastq files with qiime with the open reference module |
| gears_use_qiime_rtax | Boolean | false | Run fastq files with qiime with the rtax module |
| gears_use_seq_count | Boolean | false | Produces raw count files |
......
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