Commit a148d687 authored by Peter van 't Hof's avatar Peter van 't Hof

Fixed type

parent 1aeba6d1
......@@ -17,7 +17,7 @@ class HaplotypeCallerAllele(val root: Configurable) extends Variantcaller {
def biopetScript() {
val hc = broad.HaplotypeCaller(this, inputBams.values.toList, outputFile)
hc.alleles = config("input_alleles")
hc.genotyping_mode = "GENOTYPE_GIVEN_ALLELES"
hc.genotyping_mode = Some("GENOTYPE_GIVEN_ALLELES")
add(hc)
}
}
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