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biopet.biopet
Commits
a148d687
Commit
a148d687
authored
Apr 27, 2016
by
Peter van 't Hof
Browse files
Fixed type
parent
1aeba6d1
Changes
1
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protected/biopet-gatk-pipelines/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/variantcallers/HaplotypeCallerAllele.scala
View file @
a148d687
...
...
@@ -17,7 +17,7 @@ class HaplotypeCallerAllele(val root: Configurable) extends Variantcaller {
def
biopetScript
()
{
val
hc
=
broad
.
HaplotypeCaller
(
this
,
inputBams
.
values
.
toList
,
outputFile
)
hc
.
alleles
=
config
(
"input_alleles"
)
hc
.
genotyping_mode
=
"GENOTYPE_GIVEN_ALLELES"
hc
.
genotyping_mode
=
Some
(
"GENOTYPE_GIVEN_ALLELES"
)
add
(
hc
)
}
}
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