Commit a0d71db2 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Changed native linking

parent 8920e44e
......@@ -188,12 +188,14 @@ class Flexiprep(private var globalConfig: Config) extends QScript with BiopetQSc
}
if (!config.getAsBoolean("skip_native_link", false)) {
val lnR1 = new Ln(config) { this.in = R1 }
val lnR1 = new Ln(config)
lnR1.in = R1
R1 = new File(outputDir + R1_name + ".qc" + R1_ext)
lnR1.out = R1
add(lnR1)
if (paired) {
val lnR2 = new Ln(config) { this.in = R2 }
val lnR2 = new Ln(config)
lnR2.in = R2
R2 = new File(outputDir + R2_name + ".qc" + R2_ext)
lnR2.out = R2
add(lnR2)
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment