Fixing BIOPET-612

bammetrics/src/main/resources/nl/lumc/sasc/biopet/pipelines/bammetrics/wgsHistogram.ssp

@@ -74,7 +74,7 @@
                 #if (libs.head != libId) <tr> #end
                     #if (!sampleLevel) <td><a href="${rootPath}Samples/${sample.name}/Libraries/${libName}/index.html">${libName}</a></td> #end
                     #{
-                        val statsPaths = fields.map(x => x -> List("metrics", x)).toMap
+                        val statsPaths = fields.map(x => x -> List("metrics", x.toUpperCase)).toMap
                         val results = summary.getStatKeys(runId, "bammetrics", "wgs", sample = sample.id, library = libId.map(LibraryId).getOrElse(NoLibrary), keyValues = statsPaths)
                     }#
                     #for (field <- fields)

bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BammetricsReport.scala

@@ -286,8 +286,8 @@ object BammetricsReport extends ReportBuilder {
                        sampleId: Option[Int] = None,
                        libraryId: Option[Int] = None): Unit = {
     val statsPaths = Map(
-      "coverage" -> List("wgs", "histogram", "coverage"),
-      "count" -> List("wgs", "histogram", "count")
+      "coverage" -> List("histogram", "coverage"),
+      "count" -> List("histogram", "count")
     )
 
     writePlotFromSummary(outputDir, prefix, summary, libraryLevel, sampleId, libraryId, statsPaths,