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Commit 9fbc2376 authored by Sander Bollen's avatar Sander Bollen
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fix tiny setting

parent 6ebf4f39
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public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/bcftools/BcftoolsView.scala
View file @ 9fbc2376
...@@ -23,7 +23,7 @@ class BcftoolsView(val root: Configurable) extends Bcftools { ...@@ -23,7 +23,7 @@ class BcftoolsView(val root: Configurable) extends Bcftools {
var headerOnly: Boolean = config("header_only", false) var headerOnly: Boolean = config("header_only", false)
@Argument(doc = "Compression level", required = false) @Argument(doc = "Compression level", required = false)
var compressionLevel: Int = 9 var compressionLevel: Int = config("compression_level", default = 9)
@Argument(doc = "output type", required = false) @Argument(doc = "output type", required = false)
var outputType: String = "z" var outputType: String = "z"
......
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