Commit 9f90d2be authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Make name more strict

parent 110a3ebf
......@@ -48,7 +48,7 @@ trait MultiSampleQScript extends SummaryQScript {
/** Adds the library jobs */
final def addAndTrackJobs(): Unit = {
if (nameRegex.findFirstIn(libId) == None)
Logging.addError(s"Library '$libId' contains illegal chars, may only exist alphanumeric, '-' or '_' chars")
Logging.addError(s"Library '$libId' does not conform to '$nameRegex'")
currentSample = Some(sampleId)
currentLib = Some(libId)
addJobs()
......@@ -93,7 +93,7 @@ trait MultiSampleQScript extends SummaryQScript {
/** Adds sample jobs */
final def addAndTrackJobs(): Unit = {
if (nameRegex.findFirstIn(sampleId) == None)
Logging.addError(s"Sample '$sampleId' contains illegal chars, may only exist alphanumeric, '-' or '_' chars")
Logging.addError(s"Sample '$sampleId' does not conform to '$nameRegex'")
currentSample = Some(sampleId)
addJobs()
qscript.addSummarizable(this, "pipeline", Some(sampleId))
......@@ -133,7 +133,7 @@ trait MultiSampleQScript extends SummaryQScript {
/** Returns a list of all sampleIDs */
protected def sampleIds: Set[String] = ConfigUtils.any2map(globalConfig.map("samples")).keySet
protected lazy val nameRegex = """^[a-zA-Z0-9-_]+$""".r
protected lazy val nameRegex = """^[a-zA-Z][a-zA-Z0-9-_]+[a-zA-Z0-9]$""".r
/** Runs addAndTrackJobs method for each sample */
final def addSamplesJobs() {
......
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