From 9e36a5b66508620ca75b3875e5c08c12c91337ed Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 14 Mar 2016 17:48:14 +0100
Subject: [PATCH] Fixed compile issue
---
.../nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala
index 9cc29dc44..9a4bbd07c 100644
--- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala
+++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala
@@ -157,7 +157,7 @@ class VariantEffectPredictor(val root: Configurable) extends BiopetCommandLineFu
} else if (cache && dir.isEmpty) {
Logging.addError("Must supply dir to cache for VariantEffectPredictor")
}
- if (stats_text) outputFiles :+= new File(output.getAbsolutePath + "_summary.txt")
+ if (statsText) outputFiles :+= new File(output.getAbsolutePath + "_summary.txt")
}
/** Returns command to execute */
--
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