diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala index 9cc29dc4440faa7005b504a39697a3dfe5e05f2a..9a4bbd07cd73ad59ed8cd36e4d15e1709f265578 100644 --- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala +++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/VariantEffectPredictor.scala @@ -157,7 +157,7 @@ class VariantEffectPredictor(val root: Configurable) extends BiopetCommandLineFu } else if (cache && dir.isEmpty) { Logging.addError("Must supply dir to cache for VariantEffectPredictor") } - if (stats_text) outputFiles :+= new File(output.getAbsolutePath + "_summary.txt") + if (statsText) outputFiles :+= new File(output.getAbsolutePath + "_summary.txt") } /** Returns command to execute */