Moved class

biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/MultiSampleQScript.scala

@@ -17,9 +17,9 @@ package nl.lumc.sasc.biopet.core
 import java.io.File
 
 import nl.lumc.sasc.biopet.core.MultiSampleQScript.Gender
-import nl.lumc.sasc.biopet.core.summary.{ Summarizable, SummaryQScript }
-import nl.lumc.sasc.biopet.utils.summary.SummaryDb
-import nl.lumc.sasc.biopet.utils.{ ConfigUtils, Logging }
+import nl.lumc.sasc.biopet.core.summary.{Summarizable, SummaryQScript}
+import nl.lumc.sasc.biopet.utils.summary.db.SummaryDb
+import nl.lumc.sasc.biopet.utils.{ConfigUtils, Logging}
 import org.broadinstitute.gatk.queue.QScript
 
 import scala.concurrent.Await

biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/summary/SummaryQScript.scala

@@ -14,11 +14,11 @@
  */
 package nl.lumc.sasc.biopet.core.summary
 
-import java.io.{ File, PrintWriter }
+import java.io.{File, PrintWriter}
 
 import nl.lumc.sasc.biopet.core._
-import nl.lumc.sasc.biopet.core.extensions.{ CheckChecksum, Md5sum }
-import nl.lumc.sasc.biopet.utils.summary.SummaryDb
+import nl.lumc.sasc.biopet.core.extensions.{CheckChecksum, Md5sum}
+import nl.lumc.sasc.biopet.utils.summary.db.SummaryDb
 import org.broadinstitute.gatk.queue.QScript
 
 import scala.collection.mutable

biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala

@@ -20,7 +20,7 @@ import nl.lumc.sasc.biopet.utils.config.Configurable
 import nl.lumc.sasc.biopet.core._
 import nl.lumc.sasc.biopet.utils.ConfigUtils
 import nl.lumc.sasc.biopet.LastCommitHash
-import nl.lumc.sasc.biopet.utils.summary.SummaryDb
+import nl.lumc.sasc.biopet.utils.summary.db.SummaryDb
 import org.broadinstitute.gatk.queue.function.{InProcessFunction, QFunction}
 import org.broadinstitute.gatk.utils.commandline.{Input, Output}
 

biopet-tools/src/main/scala/nl/lumc/sasc/biopet/tools/SummaryToSqlite.scala

@@ -2,8 +2,8 @@ package nl.lumc.sasc.biopet.tools
 
 import java.io.File
 
-import nl.lumc.sasc.biopet.utils.summary.SummaryDb
-import nl.lumc.sasc.biopet.utils.{ ConfigUtils, ToolCommand }
+import nl.lumc.sasc.biopet.utils.summary.db.SummaryDb
+import nl.lumc.sasc.biopet.utils.{ConfigUtils, ToolCommand}
 import slick.driver.H2Driver.api._
 
 import scala.concurrent.Await

biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/summary/SummaryDb.scala → biopet-utils/src/main/scala/nl/lumc/sasc/biopet/utils/summary/db/SummaryDb.scala

-package nl.lumc.sasc.biopet.utils.summary
+package nl.lumc.sasc.biopet.utils.summary.db
 
-import java.io.{Closeable, File}
+import java.io.{ Closeable, File }
 
 import nl.lumc.sasc.biopet.utils.ConfigUtils
-import nl.lumc.sasc.biopet.utils.summary.db.Schema
-import slick.driver.H2Driver.api._
-
-import scala.concurrent.{Await, Future}
-import scala.concurrent.duration.Duration
 import nl.lumc.sasc.biopet.utils.summary.db.Schema._
+import slick.driver.H2Driver.api._
 
 import scala.concurrent.ExecutionContext.Implicits.global
+import scala.concurrent.duration.Duration
+import scala.concurrent.{Await, Future}
 
 /**
  * Created by pjvanthof on 05/02/2017.