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biopet.biopet
Commits
9c1b8526
Commit
9c1b8526
authored
Apr 25, 2016
by
Peter van 't Hof
Browse files
replace _ for -
parent
e8000f2f
Changes
1
Hide whitespace changes
Inline
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public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsQiimeClosed.scala
View file @
9c1b8526
...
...
@@ -57,7 +57,7 @@ class GearsQiimeClosed(val root: Configurable) extends QScript with SummaryQScri
val
splitLib
=
new
SplitLibrariesFastq
(
this
)
splitLib
.
input
:+=
fastqInput
splitLib
.
outputDir
=
new
File
(
outputDir
,
"split_libraries_fastq"
)
sampleId
.
foreach
(
splitLib
.
sampleIds
:+=
_
)
sampleId
.
foreach
(
splitLib
.
sampleIds
:+=
_
.
replaceAll
(
"_"
,
"-"
)
)
add
(
splitLib
)
val
closedReference
=
new
PickClosedReferenceOtus
(
this
)
...
...
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