From 9ba68d8248f5d3abe0b0cd3b0fb43403084a1ddf Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 12 Nov 2014 16:14:27 +0100
Subject: [PATCH] Change util to utils
---
.../scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala | 2 +-
.../scala/nl/lumc/sasc/biopet/{util => utils}/VcfUtils.scala | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
rename biopet-framework/src/main/scala/nl/lumc/sasc/biopet/{util => utils}/VcfUtils.scala (95%)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
index 641896648..19f69afff 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
@@ -11,7 +11,7 @@ import nl.lumc.sasc.biopet.core.ToolCommand
import nl.lumc.sasc.biopet.core.config.Configurable
import org.broadinstitute.gatk.utils.commandline.{ Input, Output }
import scala.collection.JavaConversions._
-import nl.lumc.sasc.biopet.util.VcfUtils._
+import nl.lumc.sasc.biopet.utils.VcfUtils._
class BastyGenerateFasta(val root: Configurable) extends BiopetJavaCommandLineFunction {
javaMainClass = getClass.getName
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/util/VcfUtils.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/VcfUtils.scala
similarity index 95%
rename from biopet-framework/src/main/scala/nl/lumc/sasc/biopet/util/VcfUtils.scala
rename to biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/VcfUtils.scala
index ecdb69d86..b0603d14f 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/util/VcfUtils.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/VcfUtils.scala
@@ -1,4 +1,4 @@
-package nl.lumc.sasc.biopet.util
+package nl.lumc.sasc.biopet.utils
import htsjdk.variant.variantcontext.VariantContext
import scala.collection.JavaConversions._
--
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