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biopet.biopet
Commits
98c67be4
Commit
98c67be4
authored
Jan 02, 2017
by
Peter van 't Hof
Browse files
Fixed unit test
parent
14dcba60
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-tools/src/test/scala/nl/lumc/sasc/biopet/tools/bamstats/BamStatsTest.scala
View file @
98c67be4
...
...
@@ -32,15 +32,17 @@ class BamStatsTest extends TestNGSuite with Matchers {
outputDir
.
deleteOnExit
()
BamStats
.
main
(
Array
(
"-b"
,
BamStatsTest
.
pairedBam01
.
getAbsolutePath
,
"-o"
,
outputDir
.
getAbsolutePath
))
new
File
(
outputDir
,
"flagstats"
)
should
exist
new
File
(
outputDir
,
"flagstats.summary.json"
)
should
exist
new
File
(
outputDir
,
"mapping_quality.tsv"
)
should
exist
new
File
(
outputDir
,
"insert_size.tsv"
)
should
exist
new
File
(
outputDir
,
"clipping.tsv"
)
should
exist
new
File
(
outputDir
,
"left_clipping.tsv"
)
should
exist
new
File
(
outputDir
,
"right_clipping.tsv"
)
should
exist
new
File
(
outputDir
,
"5_prime_clipping.tsv"
)
should
exist
new
File
(
outputDir
,
"3_prime_clipping.tsv"
)
should
exist
new
File
(
outputDir
,
"bamstats.json"
)
should
exist
new
File
(
outputDir
,
"bamstats.summary.json"
)
should
exist
new
File
(
outputDir
,
"flagstats"
)
shouldNot
exist
new
File
(
outputDir
,
"flagstats.summary.json"
)
shouldNot
exist
new
File
(
outputDir
,
"mapping_quality.tsv"
)
shouldNot
exist
new
File
(
outputDir
,
"insert_size.tsv"
)
shouldNot
exist
new
File
(
outputDir
,
"clipping.tsv"
)
shouldNot
exist
new
File
(
outputDir
,
"left_clipping.tsv"
)
shouldNot
exist
new
File
(
outputDir
,
"right_clipping.tsv"
)
shouldNot
exist
new
File
(
outputDir
,
"5_prime_clipping.tsv"
)
shouldNot
exist
new
File
(
outputDir
,
"3_prime_clipping.tsv"
)
shouldNot
exist
}
}
...
...
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