Fixed extensions in testing

protected/biopet-gatk-pipelines/src/test/scala/nl/lumc/sasc/biopet/pipelines/gatk/ShivaTest.scala

@@ -52,7 +52,7 @@ class ShivaTest extends TestNGSuite with Matchers {
       var m: Map[String, Any] = ShivaTest.config
       if (sample1) m = ConfigUtils.mergeMaps(ShivaTest.sample1, m)
       if (sample2) m = ConfigUtils.mergeMaps(ShivaTest.sample2, m)
-      if (dbsnp) m = ConfigUtils.mergeMaps(Map("dbsnp" -> "test"), m)
+      if (dbsnp) m = ConfigUtils.mergeMaps(Map("dbsnp" -> "test.vcf.gz"), m)
       ConfigUtils.mergeMaps(Map("multisample_variantcalling" -> multi,
         "use_indel_realigner" -> realign,
         "use_base_recalibration" -> baseRecalibration), m)

protected/biopet-gatk-pipelines/src/test/scala/nl/lumc/sasc/biopet/pipelines/gatk/ShivaVariantcallingTest.scala

@@ -142,6 +142,6 @@ object ShivaVariantcallingTest {
     "md5sum" -> Map("exe" -> "test"),
     "bgzip" -> Map("exe" -> "test"),
     "tabix" -> Map("exe" -> "test"),
-    "input_alleles" -> "test"
+    "input_alleles" -> "test.vcf.gz"
   )
 }
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