Commit 98adc5f5 authored by Peter van 't Hof's avatar Peter van 't Hof

Fixed extensions in testing

parent 8054aa2d
......@@ -52,7 +52,7 @@ class ShivaTest extends TestNGSuite with Matchers {
var m: Map[String, Any] = ShivaTest.config
if (sample1) m = ConfigUtils.mergeMaps(ShivaTest.sample1, m)
if (sample2) m = ConfigUtils.mergeMaps(ShivaTest.sample2, m)
if (dbsnp) m = ConfigUtils.mergeMaps(Map("dbsnp" -> "test"), m)
if (dbsnp) m = ConfigUtils.mergeMaps(Map("dbsnp" -> "test.vcf.gz"), m)
ConfigUtils.mergeMaps(Map("multisample_variantcalling" -> multi,
"use_indel_realigner" -> realign,
"use_base_recalibration" -> baseRecalibration), m)
......
......@@ -142,6 +142,6 @@ object ShivaVariantcallingTest {
"md5sum" -> Map("exe" -> "test"),
"bgzip" -> Map("exe" -> "test"),
"tabix" -> Map("exe" -> "test"),
"input_alleles" -> "test"
"input_alleles" -> "test.vcf.gz"
)
}
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