From 982c046008cc3a4c4d0d7519dc3c56551202dd0c Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 16 Feb 2015 11:33:00 +0100
Subject: [PATCH] Rename Stats to Data
---
.../scala/nl/lumc/sasc/biopet/core/summary/Summarizable.scala | 4 +---
.../nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala | 2 +-
2 files changed, 2 insertions(+), 4 deletions(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/summary/Summarizable.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/summary/Summarizable.scala
index f9f36c7e0..d71eaa160 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/summary/Summarizable.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/summary/Summarizable.scala
@@ -9,11 +9,9 @@ import nl.lumc.sasc.biopet.core.config.Configurable
*/
trait Summarizable extends Configurable {
- var summaryModule = configName
-
def summaryFiles: Map[String, File]
- def summaryStats: Map[String, Any]
+ def summaryData: Map[String, Any]
/**
* This function is used to merge
diff --git a/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala b/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala
index 31fdc6b84..b9574333e 100644
--- a/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala
+++ b/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala
@@ -165,7 +165,7 @@ class Fastqc(root: Configurable) extends nl.lumc.sasc.biopet.extensions.Fastqc(r
def summaryFiles: Map[String, File] = Map("test" -> this.fastqfile)
- def summaryStats: Map[String, Any] = Map()
+ def summaryData: Map[String, Any] = Map()
}
object Fastqc {
--
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