diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/summary/Summarizable.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/summary/Summarizable.scala index f9f36c7e09366c6c04bf84bc625cd86056363e5e..d71eaa1608feffffea1fe82537af02bda4e2257e 100644 --- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/summary/Summarizable.scala +++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/summary/Summarizable.scala @@ -9,11 +9,9 @@ import nl.lumc.sasc.biopet.core.config.Configurable */ trait Summarizable extends Configurable { - var summaryModule = configName - def summaryFiles: Map[String, File] - def summaryStats: Map[String, Any] + def summaryData: Map[String, Any] /** * This function is used to merge diff --git a/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala b/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala index 31fdc6b84005d40a40e39ccba110c9e5400899e0..b9574333ef16d877eb50c4e85d9c5173dc888426 100644 --- a/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala +++ b/public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala @@ -165,7 +165,7 @@ class Fastqc(root: Configurable) extends nl.lumc.sasc.biopet.extensions.Fastqc(r def summaryFiles: Map[String, File] = Map("test" -> this.fastqfile) - def summaryStats: Map[String, Any] = Map() + def summaryData: Map[String, Any] = Map() } object Fastqc {