From 981e80ef1ee33d6ad25be1c912cae4a82ec824aa Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 19 Aug 2015 17:10:44 +0200
Subject: [PATCH] Added a scatter plot
---
.../nl/lumc/sasc/biopet/tools/RegionAfCount.scala | 10 ++++++++++
1 file changed, 10 insertions(+)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/RegionAfCount.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/RegionAfCount.scala
index 96446e4d1..b409b65b5 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/RegionAfCount.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/RegionAfCount.scala
@@ -112,6 +112,16 @@ object RegionAfCount extends ToolCommand {
}
writer.close()
+ logger.info("Generate plot")
+
+ val scatterPlot = new ScatterPlot(null)
+ scatterPlot.input = cmdArgs.outputFile
+ scatterPlot.output = new File(cmdArgs.outputFile.getAbsolutePath + ".png")
+ scatterPlot.ylabel = Some("Sum of AFs")
+ scatterPlot.width = Some(1200)
+ scatterPlot.height = Some(1000)
+ scatterPlot.runLocal()
+
logger.info("Done")
}
}
\ No newline at end of file
--
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