diff --git a/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala b/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala index a7bdaf92f805e180968c1d7af36eb10f81e03eff..c03c0a717b753c057c34fa687847a4fb28cf0525 100644 --- a/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala +++ b/public/biopet-core/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunction.scala @@ -50,9 +50,12 @@ trait BiopetCommandLineFunction extends CommandLineResources { biopetFunction => writer.println("set -eubf") writer.println("set -o pipefail") lines.foreach(writer.println) + jobDelayTime.foreach(x => writer.println(s"sleep $x")) writer.close() } + var jobDelayTime: Option[Int] = config("job_delay_time") + // This overrides the default "sh" from queue. For Biopet the default is "bash" updateJobRun = { case jt: JobTemplate =>