Rename id to report

generate-indexes/src/main/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/DownloadGenomes.scala

@@ -64,7 +64,7 @@ class DownloadGenomes(val root: Configurable) extends QScript with BiopetQScript
         val fastaFile = new File(genomeDir, "reference.fa")
         val downloadFastaFile = new File(genomeDir, "download.reference.fa")
 
-        genomeConfig.get("ncbi_assembly_id") match {
+        genomeConfig.get("ncbi_assembly_report") match {
           case Some(assemblyID: String) =>
             val downloadAssembly = new DownloadNcbiAssembly(this)
             downloadAssembly.assemblyId = assemblyID

generate-indexes/src/test/scala/nl/lumc/sasc/biopet/pipelines/generateindexes/DownloadGenomesTest.scala

@@ -45,7 +45,7 @@ class DownloadGenomesTest extends TestNGSuite with Matchers {
   @Test
   def testNcbiAssembly(): Unit = {
     val pipeline = initPipeline(Map())
-    pipeline.referenceConfig = Map("s1" -> Map("g1" -> Map("ncbi_assembly_id" -> "id")))
+    pipeline.referenceConfig = Map("s1" -> Map("g1" -> Map("ncbi_assembly_report" -> "id")))
     noException should be thrownBy pipeline.script()
   }