From 9781583e4030d56f2d5fe618ff5390ba9a3a611b Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 9 Mar 2015 10:40:45 +0100
Subject: [PATCH] More efficient case class
---
.../src/main/scala/nl/lumc/sasc/biopet/tools/Seqstat.scala | 7 ++-----
1 file changed, 2 insertions(+), 5 deletions(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/Seqstat.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/Seqstat.scala
index 822487bf9..521137715 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/Seqstat.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/Seqstat.scala
@@ -164,14 +164,11 @@ object Seqstat extends ToolCommand {
case class ReadStat(qual: mutable.ArrayBuffer[Long] = mutable.ArrayBuffer(),
nuc: mutable.ArrayBuffer[Long] = mutable.ArrayBuffer.fill('T'.toInt + 1)(0),
- var withN: Long,
+ var withN: Long = 0L,
lengths: mutable.ArrayBuffer[Int] = mutable.ArrayBuffer())
val baseStats: mutable.ArrayBuffer[BaseStat] = mutable.ArrayBuffer()
- val readStats: ReadStat = new ReadStat(mutable.ArrayBuffer(),
- mutable.ArrayBuffer.fill('T'.toInt + 1)(0),
- 0L,
- mutable.ArrayBuffer())
+ val readStats: ReadStat = new ReadStat()
/**
* Compute the quality metric per read
--
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