diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/Seqstat.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/Seqstat.scala index 822487bf9f79c45bd913ef247984b6c6d1a42f3f..5211377159067f479f03c1a5562ffd4ea8be3c56 100644 --- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/Seqstat.scala +++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/Seqstat.scala @@ -164,14 +164,11 @@ object Seqstat extends ToolCommand { case class ReadStat(qual: mutable.ArrayBuffer[Long] = mutable.ArrayBuffer(), nuc: mutable.ArrayBuffer[Long] = mutable.ArrayBuffer.fill('T'.toInt + 1)(0), - var withN: Long, + var withN: Long = 0L, lengths: mutable.ArrayBuffer[Int] = mutable.ArrayBuffer()) val baseStats: mutable.ArrayBuffer[BaseStat] = mutable.ArrayBuffer() - val readStats: ReadStat = new ReadStat(mutable.ArrayBuffer(), - mutable.ArrayBuffer.fill('T'.toInt + 1)(0), - 0L, - mutable.ArrayBuffer()) + val readStats: ReadStat = new ReadStat() /** * Compute the quality metric per read