From 9748f8e8d16184cf27b9ff9a94226df70b572caa Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Sat, 22 Aug 2015 13:55:17 +0200
Subject: [PATCH] Adding originals to combined
---
.../nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala
index d2969ec0c..abd469a34 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/intervals/BedRecordList.scala
@@ -62,7 +62,9 @@ object BedRecordList {
val overlapRecords = records.takeWhile(_.start <= records.head.end)
val end = overlapRecords.map(_.end).max
- newRecords += BedRecord(chr, start, end)
+ val newRecord = BedRecord(chr, start, end)
+ newRecord._originals = overlapRecords
+ newRecords += newRecord
combineOverlap(records.drop(overlapRecords.length), newRecords)
} else newRecords.toList
}
--
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