Commit 96c33eab authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

fix bug on single sample calling

parent 5e7634c1
......@@ -82,7 +82,7 @@ trait ShivaTrait extends MultiSampleQScript with SummaryQScript {
case _ => (None, None, None)
}
val variantcalling = if (config("library_variantcalling", default = false).asBoolean &&
lazy val variantcalling = if (config("library_variantcalling", default = false).asBoolean &&
(bamFile.isDefined || preProcessBam.isDefined)) {
Some(makeVariantcalling(multisample = false))
} else None
......@@ -198,7 +198,7 @@ trait ShivaTrait extends MultiSampleQScript with SummaryQScript {
}
}).flatten.toList)
val variantcalling = if (config("multisample_sample_variantcalling", default = true).asBoolean) {
lazy val variantcalling = if (config("single_sample_variantcalling", default = true).asBoolean) {
Some(makeVariantcalling(multisample = true))
} else None
......@@ -228,7 +228,7 @@ trait ShivaTrait extends MultiSampleQScript with SummaryQScript {
}
}
val variantcalling = if (config("multisample_sample_variantcalling", default = true).asBoolean) {
lazy val variantcalling = if (config("multisample_sample_variantcalling", default = true).asBoolean) {
Some(makeVariantcalling(multisample = true))
} else None
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment