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biopet.biopet
Commits
95db7a53
Commit
95db7a53
authored
Mar 18, 2015
by
Peter van 't Hof
Browse files
Fix dependency bug in flexiprep
parent
f16b24c6
Changes
1
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Inline
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public/flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
View file @
95db7a53
...
@@ -186,12 +186,14 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
...
@@ -186,12 +186,14 @@ class Flexiprep(val root: Configurable) extends QScript with SummaryQScript with
val
seqstat_R1
=
Seqstat
(
this
,
R1
,
outDir
)
val
seqstat_R1
=
Seqstat
(
this
,
R1
,
outDir
)
seqstat_R1
.
isIntermediate
=
true
seqstat_R1
.
isIntermediate
=
true
seqstat_R1
.
deps
=
deps
add
(
seqstat_R1
)
add
(
seqstat_R1
)
addSummarizable
(
seqstat_R1
,
"seqstat_R1"
)
addSummarizable
(
seqstat_R1
,
"seqstat_R1"
)
if
(
paired
)
{
if
(
paired
)
{
val
seqstat_R2
=
Seqstat
(
this
,
R2
,
outDir
)
val
seqstat_R2
=
Seqstat
(
this
,
R2
,
outDir
)
seqstat_R2
.
isIntermediate
=
true
seqstat_R2
.
isIntermediate
=
true
seqstat_R2
.
deps
=
deps
add
(
seqstat_R2
)
add
(
seqstat_R2
)
addSummarizable
(
seqstat_R2
,
"seqstat_R2"
)
addSummarizable
(
seqstat_R2
,
"seqstat_R2"
)
}
}
...
...
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