diff --git a/public/flexiprep/src/test/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepTest.scala b/public/flexiprep/src/test/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepTest.scala index e3953235e9f3b950dd9d12bc62dc525ea8011279..208f1c41aebcf118a32a305c500713d1028b0f7d 100644 --- a/public/flexiprep/src/test/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepTest.scala +++ b/public/flexiprep/src/test/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepTest.scala @@ -26,7 +26,7 @@ class FlexiprepTest extends TestNGSuite with Matchers { } } - @Test def TestDefault = { + @Test def testDefault = { val map = ConfigUtils.mergeMaps(Map("output_dir" -> FlexiprepTest.outputDir), Map(FlexiprepTest.excutables.toSeq: _*)) val flexiprep: Flexiprep = initPipeline(map) @@ -44,7 +44,7 @@ class FlexiprepTest extends TestNGSuite with Matchers { flexiprep.functions.count(_.isInstanceOf[Gzip]) shouldBe 1 } - @Test def TestDefaultPaired = { + @Test def testDefaultPaired = { val map = ConfigUtils.mergeMaps(Map("output_dir" -> FlexiprepTest.outputDir), Map(FlexiprepTest.excutables.toSeq: _*)) val flexiprep: Flexiprep = initPipeline(map) @@ -63,7 +63,7 @@ class FlexiprepTest extends TestNGSuite with Matchers { flexiprep.functions.count(_.isInstanceOf[Gzip]) shouldBe 2 } - @Test def TestClipTrimPaired = { + @Test def testClipTrimPaired = { val map = ConfigUtils.mergeMaps(Map("output_dir" -> FlexiprepTest.outputDir, "skip_trim" -> false, "skip_clip" -> false), Map(FlexiprepTest.excutables.toSeq: _*)) val flexiprep: Flexiprep = initPipeline(map) @@ -83,7 +83,7 @@ class FlexiprepTest extends TestNGSuite with Matchers { flexiprep.functions.count(_.isInstanceOf[Gzip]) shouldBe 2 } - @Test def TestTrimPaired = { + @Test def testTrimPaired = { val map = ConfigUtils.mergeMaps(Map("output_dir" -> FlexiprepTest.outputDir, "skip_trim" -> false, "skip_clip" -> true), Map(FlexiprepTest.excutables.toSeq: _*)) val flexiprep: Flexiprep = initPipeline(map) @@ -103,7 +103,7 @@ class FlexiprepTest extends TestNGSuite with Matchers { flexiprep.functions.count(_.isInstanceOf[Gzip]) shouldBe 2 } - @Test def TestClipPaired = { + @Test def testClipPaired = { val map = ConfigUtils.mergeMaps(Map("output_dir" -> FlexiprepTest.outputDir, "skip_trim" -> true, "skip_clip" -> false), Map(FlexiprepTest.excutables.toSeq: _*)) val flexiprep: Flexiprep = initPipeline(map) @@ -123,7 +123,7 @@ class FlexiprepTest extends TestNGSuite with Matchers { flexiprep.functions.count(_.isInstanceOf[Gzip]) shouldBe 2 } - @Test def TestPaired = { + @Test def testPaired = { val map = ConfigUtils.mergeMaps(Map("output_dir" -> FlexiprepTest.outputDir, "skip_trim" -> true, "skip_clip" -> true), Map(FlexiprepTest.excutables.toSeq: _*)) val flexiprep: Flexiprep = initPipeline(map)