diff --git a/mvn_install_queue.sh b/mvn_install_queue.sh index de192ec430d2a1a84f6db2b2e2e4841e79e4f201..30bbe3335d72569e34d54dc807a3f40304ad9a3e 100755 --- a/mvn_install_queue.sh +++ b/mvn_install_queue.sh @@ -1,22 +1,6 @@ -JAR=/data/DIV5/SASC/common/programs/Queue-3.1-1/Queue-shark.jar +JAR=/data/DIV5/SASC/common/programs/Queue-3.2-2/Queue-shark.jar ID=queue-package -VERSION=3.1 -GROUP=org.broadinstitute.sting -mvn install:install-file -Dfile=$JAR -DgroupId=$GROUP -DartifactId=$ID -Dversion=$VERSION -Dpackaging=jar - -JAR=/data/DIV5/SASC/common/programs/Queue-3.1-1/queue-framework-3.1.jar -ID=queue-framework -mvn install:install-file -Dfile=$JAR -DgroupId=$GROUP -DartifactId=$ID -Dversion=$VERSION -Dpackaging=jar - -#gatk-package - -JAR=/data/DIV5/SASC/common/programs/Queue-3.1-1/gatk-package-3.1.jar -ID=gatk-package -mvn install:install-file -Dfile=$JAR -DgroupId=$GROUP -DartifactId=$ID -Dversion=$VERSION -Dpackaging=jar - -#gatk-framework - -JAR=/data/DIV5/SASC/common/programs/Queue-3.1-1/gatk-framework-3.1.jar -ID=gatk-framework +VERSION=3.2-2 +GROUP=org.broadinstitute.gatk mvn install:install-file -Dfile=$JAR -DgroupId=$GROUP -DartifactId=$ID -Dversion=$VERSION -Dpackaging=jar