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biopet.biopet
Commits
93c98188
Commit
93c98188
authored
Jun 07, 2015
by
Peter van 't Hof
Browse files
Removed multisample page
parent
74c4a239
Changes
1
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Inline
Side-by-side
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaReport.scala
View file @
93c98188
...
...
@@ -23,18 +23,6 @@ object ShivaReport extends MultisampleReportBuilder {
def
indexPage
=
{
ReportPage
(
Map
(
"MultiSample"
->
ReportPage
(
Map
(),
List
(
"Variantcalling"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/shiva/sampleVariants.ssp"
,
Map
(
"showPlot"
->
true
,
"showTable"
->
true
)),
"Alignment"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/bammetrics/alignmentSummary.ssp"
,
Map
(
"sampleLevel"
->
true
,
"showPlot"
->
true
,
"showTable"
->
true
)),
"Insert Size"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/bammetrics/insertSize.ssp"
,
Map
(
"sampleLevel"
->
true
,
"showPlot"
->
true
,
"showTable"
->
true
)),
"QC reads"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepReadSummary.ssp"
,
Map
(
"showPlot"
->
true
,
"showTable"
->
true
)),
"QC bases"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepBaseSummary.ssp"
,
Map
(
"showPlot"
->
true
,
"showTable"
->
true
))
),
Map
()),
"Samples"
->
generateSamplesPage
(
pageArgs
),
"Files"
->
filesPage
,
"Versions"
->
ReportPage
(
Map
(),
List
(),
Map
())
...
...
@@ -42,16 +30,16 @@ object ShivaReport extends MultisampleReportBuilder {
List
(
"Report"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/shiva/shivaFront.ssp"
),
"Variantcalling"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/shiva/sampleVariants.ssp"
,
Map
(
"showPlot"
->
true
,
"showTable"
->
fals
e
)),
Map
(
"showPlot"
->
true
,
"showTable"
->
tru
e
)),
"Alignment"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/bammetrics/alignmentSummary.ssp"
,
Map
(
"sampleLevel"
->
true
,
"showPlot"
->
true
,
"showTable"
->
fals
e
)
Map
(
"sampleLevel"
->
true
,
"showPlot"
->
true
,
"showTable"
->
tru
e
)
),
"Insert Size"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/bammetrics/insertSize.ssp"
,
Map
(
"sampleLevel"
->
true
,
"showPlot"
->
true
,
"showTable"
->
fals
e
)),
Map
(
"sampleLevel"
->
true
,
"showPlot"
->
true
,
"showTable"
->
tru
e
)),
"QC reads"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepReadSummary.ssp"
,
Map
(
"showPlot"
->
true
,
"showTable"
->
fals
e
)),
Map
(
"showPlot"
->
true
,
"showTable"
->
tru
e
)),
"QC bases"
->
ReportSection
(
"/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepBaseSummary.ssp"
,
Map
(
"showPlot"
->
true
,
"showTable"
->
fals
e
))
Map
(
"showPlot"
->
true
,
"showTable"
->
tru
e
))
),
pageArgs
)
...
...
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