From 92ae5a49b5696259cc8e320f363b49bfaf9c6775 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 17 Aug 2015 17:01:07 +0200
Subject: [PATCH] Fix inversion
---
.../nl/lumc/sasc/biopet/pipelines/mapping/MappingReport.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingReport.scala b/public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingReport.scala
index 980802aeb..ab703e5b5 100644
--- a/public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingReport.scala
+++ b/public/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/MappingReport.scala
@@ -36,7 +36,7 @@ object MappingReport extends ReportBuilder {
/** Root page for single BamMetrcis report */
def indexPage = {
val skipFlexiprep = summary.getValue(sampleId, libId, "mapping", "settings", "skip_flexiprep").getOrElse(false) == true
- val bamMetricsPage = if (summary.getValue(sampleId, libId, "mapping", "settings", "skip_metrics").getOrElse(false) == true) {
+ val bamMetricsPage = if (summary.getValue(sampleId, libId, "mapping", "settings", "skip_metrics").getOrElse(false) != true) {
Some(BammetricsReport.bamMetricsPage(summary, sampleId, libId))
} else None
ReportPage((if (skipFlexiprep) Nil else List("QC" -> FlexiprepReport.flexiprepPage)) :::
--
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