Commit 921de0c8 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added mapping_to_gears

parent 8915f79e
......@@ -20,9 +20,11 @@ object MultiSampleMapping extends TemplateTool {
val aligner = if (map.contains("aligner")) map("aligner").toString
else Question.string("Aligner", posibleValues = possibleAligners, default = Some("bwa-mem"))
val mappingToGears = Question.string("Aligner", posibleValues = List("none", "all", "unmapped"), default = Some("none"))
referenceConfig ++ Map(
"aligner" -> aligner
"aligner" -> aligner,
"mapping_to_gears" -> mappingToGears
)
}
}
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