From 908ac3bddbda5f7cad8e9bd038c0a3b07f1bfb6b Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Thu, 20 Aug 2015 13:00:08 +0200
Subject: [PATCH] Remove val, no need for it
---
.../main/scala/nl/lumc/sasc/biopet/tools/RegionAfCount.scala | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/RegionAfCount.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/RegionAfCount.scala
index 1cbaee619..292d7ea42 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/RegionAfCount.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/RegionAfCount.scala
@@ -94,11 +94,10 @@ object RegionAfCount extends ToolCommand {
val sums = for (r <- region) yield {
val it = reader.query(r.getContig, r.getStart, r.getEnd)
(for (v <- it) yield {
- val bla = v.getAttribute("AF", 0) match {
+ (v.getAttribute("AF", 0) match {
case a: util.ArrayList[_] => a.map(_.toString.toDouble).toArray
case s => Array(s.toString.toDouble)
- }
- bla.sum
+ }).sum
}).sum
}
reader.close()
--
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