Fixed test

8fe61b60 · Peter van 't Hof · 3a2a8d36 · 8fe61b60
Commit 8fe61b60 authored Apr 28, 2016 by Peter van 't Hof
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Showing with 6 additions and 2 deletions

shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala ...sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala +6 -2

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--- a/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala
+++ b/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala
@@ -53,8 +53,12 @@ class ShivaVariantcallingTest extends TestNGSuite with Matchers {
      haplotypeCallerAllele <- bool;
      unifiedGenotyperAllele <- bool;
      unifiedGenotyper <- bool;
-      haplotypeCaller <- bool
-    ) yield Array[Any](bams, raw, bcftools, bcftools_singlesample, unifiedGenotyper, haplotypeCaller, haplotypeCallerGvcf, haplotypeCallerAllele, unifiedGenotyperAllele)
+      haplotypeCaller <- bool;
+      freebayes <- bool;
+      varscanCnsSinglesample <- bool
+    ) yield Array[Any](bams, raw, bcftools, bcftools_singlesample, unifiedGenotyper,
+      haplotypeCaller, haplotypeCallerGvcf, haplotypeCallerAllele, unifiedGenotyperAllele,
+      freebayes, varscanCnsSinglesample)
    ).toArray
  }