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biopet.biopet
Commits
8fe61b60
Commit
8fe61b60
authored
Apr 28, 2016
by
Peter van 't Hof
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Fixed test
parent
3a2a8d36
Changes
1
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6 additions
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2 deletions
+6
-2
shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala
...sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala
+6
-2
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shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala
View file @
8fe61b60
...
...
@@ -53,8 +53,12 @@ class ShivaVariantcallingTest extends TestNGSuite with Matchers {
haplotypeCallerAllele
<-
bool
;
unifiedGenotyperAllele
<-
bool
;
unifiedGenotyper
<-
bool
;
haplotypeCaller
<-
bool
)
yield
Array
[
Any
](
bams
,
raw
,
bcftools
,
bcftools_singlesample
,
unifiedGenotyper
,
haplotypeCaller
,
haplotypeCallerGvcf
,
haplotypeCallerAllele
,
unifiedGenotyperAllele
)
haplotypeCaller
<-
bool
;
freebayes
<-
bool
;
varscanCnsSinglesample
<-
bool
)
yield
Array
[
Any
](
bams
,
raw
,
bcftools
,
bcftools_singlesample
,
unifiedGenotyper
,
haplotypeCaller
,
haplotypeCallerGvcf
,
haplotypeCallerAllele
,
unifiedGenotyperAllele
,
freebayes
,
varscanCnsSinglesample
)
).
toArray
}
...
...
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